PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001852.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 346aa    MW: 39246.4 Da    PI: 7.7974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001852.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-1319110299
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fk+    ++l+ g + +pk f+ +hg+  +e   + l+ +s  +W++ l  ++++g+++l+kGW eF+k   L+ g  +vF+ +
  Rmu_sc0001852.1_g000021.1  19 FKIV-LDSALRDGKIEIPKAFVMKHGNCLAE--SVLLKVPSRAEWRIGL--TRCDGEVWLEKGWPEFAKFYFLDHGYLLVFSCE 97 
                                4444.3567778889**********876444..69999***********..********************************* PP

                                SS.SEE..EEEEE-S CS
                         B3  86 gr.sefelvvkvfrk 99 
                                g+ s+f   v++f++
  Rmu_sc0001852.1_g000021.1  98 GHySSF--QVQIFSR 110
                                999999..9999997 PP
2B343.55.8e-14247341699
                                ..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                +++++l++  l l   fa+e+    g+    + + l+++ gr W  ++++  +  +++   +  Wk+Fv++n+Lk+gD +vF+l
  Rmu_sc0001852.1_g000021.1 247 MQKSYLSRY-LKLQGAFAKECvcaRGV----RIVNLQNSAGRIWPATFTVevWSEGKQRQGRVSWKSFVHDNHLKVGDACVFEL 325
                                566666665.89999999999776444....479********9999887777555555556789******************** PP

                                -SS.SEE..EEEEE-S CS
                         B3  85 dgr.sefelvvkvfrk 99 
                                ++  +  +++v++fr+
  Rmu_sc0001852.1_g000021.1 326 KKGcEVPTFKVHIFRA 341
                                *998999999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MRETDQEPSP FAAKSPSFFK IVLDSALRDG KIEIPKAFVM KHGNCLAESV LLKVPSRAEW  60
RIGLTRCDGE VWLEKGWPEF AKFYFLDHGY LLVFSCEGHY SSFQVQIFSR NAMEIDYPMN  120
SSLGEGEELE DDDVSVEILD VVPSKKRGRR ELAGLWPHKT MRTKSGDEAE VSSYHRGKTK  180
HQGVEHQREK RSYGTPSSLK NCQAEGESMP TASTSLEANE HDVDTRDGAF LRATSFKYSN  240
PYLVVRMQKS YLSRYLKLQG AFAKECVCAR GVRIVNLQNS AGRIWPATFT VEVWSEGKQR  300
QGRVSWKSFV HDNHLKVGDA CVFELKKGCE VPTFKVHIFR AEDADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-19B3 family protein