PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001852.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 177aa    MW: 20418.2 Da    PI: 7.1308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001852.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.1e-1815105199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffkv    d ++s  l +p kf++++g     sk ++l+ +sg +Wev++  + ++++ +++kGW+eF k   L+ g f++F++
  Rmu_sc0001852.1_g000024.1  15 FFKVI--VDETSSIKLKIPPKFVRKYGDY--LSKSVRLKLPSGCQWEVEV--TESDSEAWFEKGWQEFFKFYSLDCGHFLLFTY 92 
                                78888..89999999***********866..8889***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g+s f   v +f++
  Rmu_sc0001852.1_g000024.1  93 QGNSMF--EVCIFDR 105
                                **9999..9999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MSAFRPPFSA ATPRFFKVIV DETSSIKLKI PPKFVRKYGD YLSKSVRLKL PSGCQWEVEV  60
TESDSEAWFE KGWQEFFKFY SLDCGHFLLF TYQGNSMFEV CIFDRTATET EYPIIIDDSY  120
VDDANSIEIL NDFTPCSKTR DKSPSPSARP SRRKRTLGPT SEAKMKGTLI NVYFEYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-25B3 family protein