PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001852.1_g000027.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 1484aa    MW: 169095 Da    PI: 8.5128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001852.1_g000027.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-1729113999
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                d+++   l +pkkf++e+g+    s  + l+ +sg +W+v++  +++ g+++++k+W eF k   L  gDf+vF+++g+sef  
  Rmu_sc0001852.1_g000027.1  29 DTSRDVKLGIPKKFVNEYGQC--LSNSVCLKLPSGSEWKVEV--TRSNGKVWFEKCWPEFSKFYSLSIGDFLVFEYEGDSEF-- 106
                                566667799*********855..7889***************..**********************************9999.. PP

                                EEEEE-S CS
                         B3  93 vvkvfrk 99 
                                +v +f++
  Rmu_sc0001852.1_g000027.1 107 HVFIFDR 113
                                9999987 PP
2B3581.7e-18256338286
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fkv ++ ++ ++g l++p +f ++h  k  ++ t++l+ ++gr+W+v+l+y   +++  ++++W  Fv++n+Lk+gD +vF+l+
  Rmu_sc0001852.1_g000027.1 256 FKVVMRRSYIQKGYLSVPSEFSKRHLTK--KPATVILQVLDGRTWSVQLKYHHERSEARFQSCWPVFVRENNLKVGDACVFTLI 337
                                7999999999***************655..5679*****************99999999***********************87 PP

                                S CS
                         B3  86 g 86 
                                +
  Rmu_sc0001852.1_g000027.1 338 N 338
                                5 PP
3B338.61.9e-125105891899
                                --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                +p+++++++  ++ +e s  + l+ + g +We+++  +++ g +++ kGW+ F+k   ++++ ++vF+++g+s+f  +v +f++
  Rmu_sc0001852.1_g000027.1 510 VPRSYVKKYekKYGEELSNIVHLKLPCGTEWEIEV--TRHNGVFWFDKGWETFCKFYSIESRYSLVFQYEGNSRF--KVNIFDR 589
                                79*******9977788999****************..**********************************9999..9999997 PP
4B336.49.4e-126897444299
                                TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                + r+W+v +  +  ++r  +++GW+eFv+ n+L+ gD++ ++l++++e  + vk+fr+
  Rmu_sc0001852.1_g000027.1 689 TTRTWTVGM--KYEKERAKFQSGWSEFVQGNKLNHGDVCDLMLIDKNELLFEVKIFRA 744
                                459******..555556779************************99999899999996 PP
5B344.42.9e-147918711496
                                T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 rl +p kf ++ + k  ++ t  l  + g r+W + l+y+ + +r+ +++GW++Fv++n+Lk+gD + F l+++++ ++ v++
  Rmu_sc0001852.1_g000027.1 791 TRLPVPAKFHKNVN-K--KPDTANLSLPGGrRTWPISLKYEVSTERVRFQSGWSKFVRDNHLKVGDACEFVLTDETRLSFEVHI 871
                                46778888874443.3..45578888888879***************************************9877766666655 PP
6B343.17.6e-1496910607100
                                 .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3    7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86  
                                 ++ +   g l +p ++++++  ++ ke sk + l+ + g +Wev++  +++ g+++++kGW++F k   L++ D++ F+++ 
  Rmu_sc0001852.1_g000027.1  969 HPTYVCGGVLKVPTSYVKKYqkKYGKELSKVVHLKLPCGTEWEVEV--TGHNGHFWFEKGWEDFSKFYSLQSHDSLAFQYEA 1048
                                 455555677999********9977789*******************..********************************99 PP

                                 SSEE..EEEEE-SS CS
                         B3   87 rsefelvvkvfrks 100 
                                 +s+f  +v +f+ks
  Rmu_sc0001852.1_g000027.1 1049 NSRF--KVNIFDKS 1060
                                 9999..9*999985 PP
7B339.69.5e-13123613102096
                                 HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3   20 kkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                                 k+f+ +h ++k++     l  + g  +W+v l+y+ +++r  +++GW +Fv++n+L+ gD +vF l++++ f++ v +
  Rmu_sc0001852.1_g000027.1 1236 KSFL-KHLSDKPS--NAELHVPGGtTTWRVGLKYEVGRKRAKFQSGWTKFVRDNNLNIGDECVFVLTDENIFSFEVVI 1310
                                 6777.55444444..46677777769***************************************9987777766665 PP
8B342.98.8e-1413911483199
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82  
                                 f+  +t  +v++s  l lp  f+++h  k  ++  ++l  ++   W v+l +rk+     +++GW eFv+ ++LkegD + F
  Rmu_sc0001852.1_g000027.1 1391 FVVPMTARNVHESF-LKLPSAFVQKHLDK--RPSHVSLWGSNDIYWPVELHFRKGA---SFQGGWIEFVQRHNLKEGDACGF 1466
                                 56677777777777.***********655..4447***************777765...58********************* PP

                                 EE-SSSEE..EEEEE-S CS
                         B3   83 kldgrsefelvvkvfrk 99  
                                 +l+++++f + v++fr+
  Rmu_sc0001852.1_g000027.1 1467 ELTEKRKFLFDVHIFRT 1483
                                 **999999999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1484 aa     Download sequence    
MSSFRRENDG RRPICCSPTP RFIQVILDDT SRDVKLGIPK KFVNEYGQCL SNSVCLKLPS  60
GSEWKVEVTR SNGKVWFEKC WPEFSKFYSL SIGDFLVFEY EGDSEFHVFI FDRSTTEIDY  120
PIKRPKMEEA PEDEFSVEIL EDIPPSPKTR EKTPLPCRQS YKKMKTSLTG KADQMFENEN  180
TEPFENPKKN KDSHCSASKI KSVSGFPAKI DGGGSSSTER FLKQSPEFCG EKHTSNINEK  240
ALIQRSIASK SEKPYFKVVM RRSYIQKGYL SVPSEFSKRH LTKKPATVIL QVLDGRTWSV  300
QLKYHHERSE ARFQSCWPVF VRENNLKVGD ACVFTLINCI AFVFEVVFYP AAEAANCPLS  360
PGGRGAIYQV KSKGSPIIEV ESECGVICGI GVSGSLETGK NKMSKTSVQV TERPSSSLTA  420
PLDNHHEAAN NFVSENPFFK VTLGSSHMEK SVVHVPASFA WSFIKRKKQK VMLQVTDRLW  480
PVDLIAFKPS LASFSSGWAT FVEEYSLRRV PRSYVKKYEK KYGEELSNIV HLKLPCGTEW  540
EIEVTRHNGV FWFDKGWETF CKFYSIESRY SLVFQYEGNS RFKVNIFDRT NSEIEYPIKT  600
PKKEENDVDD QFPPASPLLP KKNNIASSNG DKKDLPAEVD EGDKSSSTQR SQKPTTEVLG  660
RMHPSTTRGS GAVQTVKEFK YTEQPSWSTT RTWTVGMKYE KERAKFQSGW SEFVQGNKLN  720
HGDVCDLMLI DKNELLFEVK IFRAREAVDC TFSPDIDEAD AHHEHDDDNG DNDAAHDNRS  780
FTIIIRQSYT TRLPVPAKFH KNVNKKPDTA NLSLPGGRRT WPISLKYEVS TERVRFQSGW  840
SKFVRDNHLK VGDACEFVLT DETRLSFEVH IEAAKCTLPD DDEAEDDGDD SDSDCDDEYP  900
LAPRLHKRKR SSSSTKSNIE DVDGSTSNKQ FLKRIRRSMS PIGNKKKDNA LQRANAFKSV  960
KPSFVVAMHP TYVCGGVLKV PTSYVKKYQK KYGKELSKVV HLKLPCGTEW EVEVTGHNGH  1020
FWFEKGWEDF SKFYSLQSHD SLAFQYEANS RFKVNIFDKS KTEIDYPIKS PNMQENGVND  1080
HSPPASPPLP QKKKEATSSG GNYIEIDQPQ YACVNLDALL GYRWKSYSYD TSDDDYSDDE  1140
GDHSDDDNDH SDEDDEYSTA QQLHKRKRSS SSTKSSIRDV GAWTSSGQFL KRRPGVPRSI  1200
HPIRATKNDI ALQEAEDFKY VEPHFVVPMT PTNVRKSFLK HLSDKPSNAE LHVPGGTTTW  1260
RVGLKYEVGR KRAKFQSGWT KFVRDNNLNI GDECVFVLTD ENIFSFEVVI VAAKSTLPPD  1320
DEYSTAQQLH KRKRSSSSTK SSIRDVGTST STGQFLKRRP GVPRSMHPIR TTKNDIALQR  1380
AKVFKYVEPH FVVPMTARNV HESFLKLPSA FVQKHLDKRP SHVSLWGSND IYWPVELHFR  1440
KGASFQGGWI EFVQRHNLKE GDACGFELTE KRKFLFDVHI FRTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-34B3 family protein