PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001870.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23118.8 Da    PI: 6.5217
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001870.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93e-191362251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +ie  s rqvtfskRr+g++ KAe     C+ae+avi+fs+t ++ye+ss
  Rmu_sc0001870.1_g000005.1 13 KIEHLSSRQVTFSKRRKGLFNKAEDFALRCGAEIAVIVFSNTKRMYEFSS 62
                               79999*******************************************96 PP
2K-box35.44.5e-131001541872
                      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                                   +  L++ei+ L     +l G +L+ +sl+eL++Le+++ ++++++ ++Kne+
  Rmu_sc0001870.1_g000005.1 100 LSAIGLLQEEIRALNLDCSRLTGTELDGMSLRELNELEKKIREGIESVEKRKNEV 154
                                4567789********999***********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MAMSGPRRTK IEKIEHLSSR QVTFSKRRKG LFNKAEDFAL RCGAEIAVIV FSNTKRMYEF  60
SSTSMEHILL RYNKESAAGS SMESPENKSQ HEPSSSSDSL SAIGLLQEEI RALNLDCSRL  120
TGTELDGMSL RELNELEKKI REGIESVEKR KNEVQNYYQP SYMLEYSNRL DGNNSNFFSG  180
TSSSAVSGCT ESEQSKQFVD TCLHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-28MIKC_MADS family protein