PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001887.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 978aa MW: 107524 Da PI: 7.3389

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001887.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9.1e-19	369	469	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v Rmu_sc0001887.1_g000012.1 369 FEKVLSASDAGRIGRLVLPKACAEAYfpAISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTV 451 99************************556667778***********99899999999.************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F++++ + +lv++++++ Rmu_sc0001887.1_g000012.1 452 TFSRID-PGSKLVIGFRKA 469 *987.677778888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence
LEIGKRGGVE FGAMATKICM NVSCGTSNTH EWKNGWPLRS GGFAHLCYKC GAAYEKSVFC 60 DTFHLGETGW RDCSSCHKPL HCGCVASRSL YECLDYGGVG CIACANSSQP RVIQRNDVLN 120 GFGGLTLSNA SDRKSTSVEY RAVGDTVDEG KFLQLCGTVD EGKLLQLCKI MEANESTLLP 180 QSPTGEESVF LESNLLPRPQ RDDISESLGQ TKGQEVIHQI GEVSTGFFSA AQSSIGSLTF 240 AQPDNGRTML EVNHMSIPSS QPSLSMSLGA PSATPNFVQP FSGGHVDIRD QSKSPSAFQQ 300 VQKPRPILPR PLKPALPISS EANKGARIAR PPAEGRGKNQ LLPRYWPRIT DQELQKLSGA 360 LNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPAISQ SEGLPLRIQD VKGNEWTFQF 420 RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPGS KLVIGFRKAS QSVNMQGPQT 480 SVLPNGTPGE TSFSSENLAA GSGDSSLFHM NKGSKDPHLN SPSDHHLVEW DTYMQKSENG 540 HRTSEDLLQP VSNSEKKRTR NIGPKSKRLL MHSEDVLELR LTWEEAQDLL RPPPSVKPSI 600 VTIEDFEFEE YDEPPIFGKR SIFTTGPSKR QEQWAQCDNC SKWRKLPVDI LLPPKWTCSD 660 NSWDSSRCSC AAPEEMSPKQ LDNLLSSSLS LKGLKKRRKI IEKKEAEEQE PSGLDALASA 720 AILGDNVRDS GEQLVGATTK HPRHRPGCTC IVCIQPPSGK GKHKPSCKCN VCLTVKRRFT 780 TMMQRKNEKR QLEREAENSQ RKNDKHKDES EVNGTTLGDT ALHMNHSAEN SQRNNNNHKD 840 ESEMNGTTSG DAALHRNHSS ENGASSSHSR TQADAAESSS ARQIDLNCEP FGLFRNSTLQ 900 DLLKLAKAAS AARPLEKYTN ENSLRTMMCE EQAGLASCSL TQANGDNERR LPNEARISSV 960 AWDCPSIGDK VYREPDLD

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence

LEIGKRGGVE FGAMATKICM NVSCGTSNTH EWKNGWPLRS GGFAHLCYKC GAAYEKSVFC  60
DTFHLGETGW RDCSSCHKPL HCGCVASRSL YECLDYGGVG CIACANSSQP RVIQRNDVLN  120
GFGGLTLSNA SDRKSTSVEY RAVGDTVDEG KFLQLCGTVD EGKLLQLCKI MEANESTLLP  180
QSPTGEESVF LESNLLPRPQ RDDISESLGQ TKGQEVIHQI GEVSTGFFSA AQSSIGSLTF  240
AQPDNGRTML EVNHMSIPSS QPSLSMSLGA PSATPNFVQP FSGGHVDIRD QSKSPSAFQQ  300
VQKPRPILPR PLKPALPISS EANKGARIAR PPAEGRGKNQ LLPRYWPRIT DQELQKLSGA  360
LNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPAISQ SEGLPLRIQD VKGNEWTFQF  420
RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRIDPGS KLVIGFRKAS QSVNMQGPQT  480
SVLPNGTPGE TSFSSENLAA GSGDSSLFHM NKGSKDPHLN SPSDHHLVEW DTYMQKSENG  540
HRTSEDLLQP VSNSEKKRTR NIGPKSKRLL MHSEDVLELR LTWEEAQDLL RPPPSVKPSI  600
VTIEDFEFEE YDEPPIFGKR SIFTTGPSKR QEQWAQCDNC SKWRKLPVDI LLPPKWTCSD  660
NSWDSSRCSC AAPEEMSPKQ LDNLLSSSLS LKGLKKRRKI IEKKEAEEQE PSGLDALASA  720
AILGDNVRDS GEQLVGATTK HPRHRPGCTC IVCIQPPSGK GKHKPSCKCN VCLTVKRRFT  780
TMMQRKNEKR QLEREAENSQ RKNDKHKDES EVNGTTLGDT ALHMNHSAEN SQRNNNNHKD  840
ESEMNGTTSG DAALHRNHSS ENGASSSHSR TQADAAESSS ARQIDLNCEP FGLFRNSTLQ  900
DLLKLAKAAS AARPLEKYTN ENSLRTMMCE EQAGLASCSL TQANGDNERR LPNEARISSV  960
AWDCPSIGDK VYREPDLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	695	699	KKRRK
2	776	790	KRRFTTMMQRKNEKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein