PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001974.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 220aa MW: 25166.9 Da PI: 4.4584

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001974.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	7.9e-19	125	210	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y +Y+ + GF+vrk+ +k++ ++g ++ ++Cskeg+r++++k+ +++ + ++tr+gCka++ ++++gk++ +++++H Rmu_sc0001974.1_g000022.1 125 AYAKYGGKSGFNVRKQLKKRN-NKGLAVRLLYCCSKEGYRKTRTKR--ETSYSLPVTRVGCKAQMSCYRQSNGKFKTVSFDTNH 205 59***********998887.788899***********999..99999*************************** PP FAR1 86 nHela 90 nHel Rmu_sc0001974.1_g000022.1 206 NHELI 210 *96 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MDTISDEDEE QIALGQAVTK NIICINNELL SGREVAFLDE DEFGLQGYDE FNLLGENGID 60 LQGEEQDDLV SEEEDDLVSE DEVDVQTEEI FQCNDSSLSS NEDKEKKEEL YIRMEFSSDE 120 SAYKAYAKYG GKSGFNVRKQ LKKRNNKGLA VRLLYCCSKE GYRKTRTKRE TSYSLPVTRV 180 GCKAQMSCYR QSNGKFKTVS FDTNHNHELI KTPMKHMVQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	170	RKTRTKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-13	FAR1 family protein