PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002021.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 277aa MW: 30703 Da PI: 9.7532

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002021.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.2	1e-13	103	185	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+++ + +Li+a ++ rl+rg+l++++W+ev++ + r++ + ++ qCk++++ l+k+yk +k st+ + Rmu_sc0002021.1_g000001.1 103 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWKEVADSVnsrRDGAVFKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIF 180 7************************************98888999****************98865543......56777 PP trihelix 82 fdqle 86 +d+l+ Rmu_sc0002021.1_g000001.1 181 YDSLD 185 77765 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MKQPSTQGRT CVLEAKQFHM VKLEQLVVCP NPNRKPDVTA GRIHGQISIP FPSPILFPIS 60 HPLPYNTSRF HSNSPTLSLS LSTRTRPMER PTRPYAPGGR EDCWSDDATS VLITAWGDRY 120 LRLNRGNLRQ KDWKEVADSV NSRRDGAVFK TDGQCKNRID TLKKKYKLEK SKPFPSTWIF 180 YDSLDSLIGV PSSNAAALTR PPKPLTLALT LKSAADPSPL GFRRCGSTES DGEDDVEGGG 240 VGLAGGAACR QLARAILKFG EIYERMESSK QEQMVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	4e-33	Trihelix family protein