PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002021.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 254aa    MW: 28084.3 Da    PI: 5.0014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002021.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181055147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W+++Ed  l+++v+++G+++W++I++ ++ gR++k+c++rw + 
  Rmu_sc0002021.1_g000013.1 10 KGSWSPQEDSTLIKLVAEHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 55
                               799*****************************.***********985 PP
2Myb_DNA-binding544e-1763106247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +++++ Ed  +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  Rmu_sc0002021.1_g000013.1  63 KPFSPAEDAAIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 106
                                689******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MSGGGDNRVK GSWSPQEDST LIKLVAEHGP RNWSLISSGI PGRSGKSCRL RWCNQLSPDV  60
QHKPFSPAED AAIVRAHALH GNKWATIARL LPGRTDNAIK NHWNSTLRRR RLAESSSASS  120
ELKRLIGATS DDPETKRQCL RGASAEEDSF KAVAAGVEGV LTSLTLSPPG QKVENEVVLK  180
SEEVGEEEEE DNDDHQEEAV DDEEKCTVEM EETCLMTMMQ RMIAQEVRNY IESLRAENGL  240
VFGLQSTVQN DRKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-52MYB family protein