PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002030.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 87aa    MW: 9564.06 Da    PI: 9.709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002030.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260606.7e-191984367
                     DUF260  3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
                                a kvlrrkCa+ C++a yf ++q p +fa++hk+FGasnv+kll ++  +++++a+ +++ye ++
  Rmu_sc0002030.1_g000020.1 19 GAFKVLRRKCASYCIFASYFFSQQwPVRFAAIHKVFGASNVSKLLLHVLVHDQPTAIVTMAYEVCI 84
                               588*****************99999**************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    
MASRSTSSSD TTGTSSPSGA FKVLRRKCAS YCIFASYFFS QQWPVRFAAI HKVFGASNVS  60
KLLLHVLVHD QPTAIVTMAY EVCIIKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-26LBD family protein