PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002045.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 378aa    MW: 41777.6 Da    PI: 6.3065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002045.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-1120106390
                                EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.l 84 
                                 + ++s + ++  lv+p +f+ e+ +g+  ++ +++le +   +W+v++  +  +g++ l++GW eFv +n ++ g ++v+  +
  Rmu_sc0002045.1_g000026.1  20 IQVVRSPSKNTESLVIPPPFVIEFmNGDRCRQGKIKLEGLGQCQWRVEI--NTDGGGVELGEGWAEFVGENLVD-GWMLVLLrY 100
                                4566788888888********999955555666****************..999999***********998555.555555415 PP

                                -SSSEE CS
                         B3  85 dgrsef 90 
                                +g ++f
  Rmu_sc0002045.1_g000026.1 101 EGAMTF 106
                                544444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MASGSGSHRP MQMGRQPCFI QVVRSPSKNT ESLVIPPPFV IEFMNGDRCR QGKIKLEGLG  60
QCQWRVEINT DGGGVELGEG WAEFVGENLV DGWMLVLLRY EGAMTFSARR YGRSGALMVT  120
APRGRQTEET PAGVGGIYPS FTQLVIPGGM NSEVLEIPAG IFRGGSSRTT IESKVWLNNM  180
NWGMSCNARI KVSEDGGVIK GGWDRWVSAN IVRVCKWCIV DYNRSKNEAS VMAFLQCGGV  240
MSNVPMMNAV SIGDAMYVDS CHEEYPEEEE EEEEDLADGG QAGHMVQFPI PQTVIRVGKK  300
YGQLPTEYAK QYFPGVGSRQ VVVRTGDGQS WEVSFVKSNE TYRFSGGFVE LKKGYGLKVG  360
NKCKLSYQGN WVFVMEKM