PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002060.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 357aa    MW: 41468.2 Da    PI: 5.6489
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002060.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.41.8e-25190237552
                     RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +s e++s+yF++pi++AAkeL+++lT+LK++CR +GI+RWPhRk++sl
  Rmu_sc0002060.1_g000022.1 190 LSRETISSYFYMPITQAAKELNIGLTLLKKRCRDLGIRRWPHRKLTSL 237
                                7899*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MTMKSHHQSR SLTPNWVVSK DPENPFSFPN QFSPADFSGY APVLDWENEF PPMVQDYTFI  60
DALPFMESCL PSLDIQPIRH LFPGDDFSFG DNGNENENGV NSELFASGFE RPNHHHQQEQ  120
EQEQQQQQQQ QHQQQEKQQP NLLLPSNEDQ SGADREHVAE ERKRKRRCMR IDHEVKSGSS  180
TRSYSSSRLL SRETISSYFY MPITQAAKEL NIGLTLLKKR CRDLGIRRWP HRKLTSLQTL  240
IRNIQELGKE EEENEEKLRN AIELLEREKK LMEEAPDMQL EDNTKRLRQA CFKANYKKRK  300
IMGMNLIDYP PHSSNFSTID TRGGKSVAIL DNRGDEEDEE IKSLLSDSFS SSSSMMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.17e-39Nin-like family protein