PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002076.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 427aa MW: 48234.9 Da PI: 4.3261

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002076.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.3	5.5e-48	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrF+Ptd elv++yLk+kv gk+l+l +vi+evdiyk+ PwdLp k + ++++ +wyfFs+r+kkya+g r nra++ gy Rmu_sc0002076.1_g000012.1 6 LPPGFRFNPTDVELVQYYLKRKVMGKRLHL-QVIAEVDIYKSAPWDLPdKyCWRSGDLKWYFFSPREKKYARGARMNRAADCGY 88 79**************************.99**********96446677888********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 Wk++gkd++v++ ++e+vg ktL+f++grap+ge+t+Wv+heyrle Rmu_sc0002076.1_g000012.1 89 WKTSGKDRSVVC-GSEVVGWIKTLIFHTGRAPRGERTNWVLHEYRLE 134 ********.9*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLHLQVIAE VDIYKSAPWD LPDKYCWRSG 60 DLKWYFFSPR EKKYARGARM NRAADCGYWK TSGKDRSVVC GSEVVGWIKT LIFHTGRAPR 120 GERTNWVLHE YRLEDKNLVD MGVPQDSYVL CMVFQKDGIG PRSNKQYGAP FREEDWTDDE 180 VETDVVPYVI MSEPNLVHAN MREPEPDLVQ ANIPDQVLVN SNITEPDLVY GNVPDPYLVY 240 PNMPQSDLGC ANMPEPYLVL LSNYNSSVAT HTNSHESCVS DILPPSSNVL QSVSSNYVTT 300 EKSHVSTDDD ITSMLNCFAE EGTFSMGDID KNEELDNFIY SGDANPIADL EIRHTYEDLG 360 GLSKDGYNIP NGAISGAPGE NEPYLELVDL DKPLNDNNSL FPMISPPPSF LGETPYEDLF 420 FSWRDDL

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLHLQVIAE VDIYKSAPWD LPDKYCWRSG  60
DLKWYFFSPR EKKYARGARM NRAADCGYWK TSGKDRSVVC GSEVVGWIKT LIFHTGRAPR  120
GERTNWVLHE YRLEDKNLVD MGVPQDSYVL CMVFQKDGIG PRSNKQYGAP FREEDWTDDE  180
VETDVVPYVI MSEPNLVHAN MREPEPDLVQ ANIPDQVLVN SNITEPDLVY GNVPDPYLVY  240
PNMPQSDLGC ANMPEPYLVL LSNYNSSVAT HTNSHESCVS DILPPSSNVL QSVSSNYVTT  300
EKSHVSTDDD ITSMLNCFAE EGTFSMGDID KNEELDNFIY SGDANPIADL EIRHTYEDLG  360
GLSKDGYNIP NGAISGAPGE NEPYLELVDL DKPLNDNNSL FPMISPPPSF LGETPYEDLF  420
FSWRDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	3e-86	NAC family protein