PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002082.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 222aa    MW: 24548.8 Da    PI: 4.3121
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002082.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.9e-173999357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+t+t++ql++L+el++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0002082.1_g000025.1 39 NRWTPTPDQLRILQELYYDkvLQYPTPEKIQEICLHLqqygQIEDKNVFFWFQNLKARERQ 99
                               7****************96679*************************************97 PP
2Wus_type_Homeobox94.77.9e-3137100264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp+Q++iL+ely+ + l+ P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0002082.1_g000025.1  37 TNNRWTPTPDQLRILQELYYdKVLQYPTPEKIQEICLHLQQYGQIEDKNVFFWFQNLKARERQK 100
                                689***************99688899*************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MEPRTLQLME LQTQQQIEDE GNNQAAGSSA NTPIRQTNNR WTPTPDQLRI LQELYYDKVL  60
QYPTPEKIQE ICLHLQQYGQ IEDKNVFFWF QNLKARERQK LKLIQNVRVG GSPDLNFGST  120
SSTDDGRSID LNFGSTGSTG TDGSIDLNFG SCVGYGVDPY SSSPFNTNTS TTSFGTTGGQ  180
TSMDQRGGDH QEVETLPLFP VQGENVLGNP KTTSDEGSAY GY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-25WOX family protein