PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002115.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 229aa    MW: 26506.6 Da    PI: 5.4034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002115.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-151562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W +eEde+l  +v++ G ++W++ a++ g++R++ +c++rw++yl
  Rmu_sc0002115.1_g000020.1 15 KGPWLEEEDERLTMCVRLKGDRRWDALAKESGLRRSGRSCRLRWLNYL 62
                               79********************************************97 PP
2Myb_DNA-binding48.91.5e-1572113548
                                -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                + eE+++++++++++G++ W++Iar ++ gRt++++k++w+++l
  Rmu_sc0002115.1_g000020.1  72 SVEEEKIILHLHELWGNK-WSKIARVLP-GRTDNEIKNYWRTHL 113
                                78****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MAYEAAAVEG EKLRKGPWLE EEDERLTMCV RLKGDRRWDA LAKESGLRRS GRSCRLRWLN  60
YLRPNLKHGH ISVEEEKIIL HLHELWGNKW SKIARVLPGR TDNEIKNYWR THLVKKAQIQ  120
DGDAASAGNL QCTSKRAQQG LFFQDGDDMS AEKKYNFDQD QDSVEKLWGA KETYSDDLCL  180
SDFALPSSPY ETWLSDWISE LSSEQSGITW IPHHDSDAWD CSSSLWDMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-41MYB family protein