PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002119.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 590aa MW: 67028 Da PI: 6.0937

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002119.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.5	6.3e-37	59	217	2	128
NAM 2 ppGfr...FhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...........................kvkae 54 p+G+r F Pt+eelv++yLkkk++g + e++++i+e+d++k+eP ++ +++a+ Rmu_sc0002119.1_g000009.1 59 PVGYRfldFLPTEEELVNHYLKKKIHGANdSEINQIIPEIDLCKYEPLSFLVtkdstflnsnhcpflnmihyeqallgtETEAH 142 6676622268**************9995667778*******9996346899*********99999887766668 PP NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ew+fF++++ ky++++r+nr+tk+gyWk +gk++ ++++ +++++g+kktL+fy+gr pk++kt+Wv+hey l Rmu_sc0002119.1_g000009.1 143 DMEWFFFTRKAYKYNKSSRSNRSTKKGYWKISGKERGIKARrSKAVIGMKKTLTFYQGRVPKSKKTSWVIHEYYL 217 88*********************************98566779************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MPRNRVGSYD MSGLLPTSKA INTPSLFSSA SQSSPSRQRG YIQHDNNMSR DKTTPLSVPV 60 GYRFLDFLPT EEELVNHYLK KKIHGANDSE INQIIPEIDL CKYEPLSFLV TKDSTFLNSN 120 HCPFLNMIHY EQALLGTETE AHDMEWFFFT RKAYKYNKSS RSNRSTKKGY WKISGKERGI 180 KARRSKAVIG MKKTLTFYQG RVPKSKKTSW VIHEYYLPGN GVIQKQAQGD FVICRLKIRS 240 DKKDSLVRNE GQSDSASVSE MNQEGNVELL FHQPQPQDCC SSALRSPVSQ ELEAVLQTNN 300 TNDDCNELQS PFGDSDSCHQ DGNEVSTCDE YETVYDVFPQ LRDPPEENLD SLFGPHQPQD 360 YCPSILQSPI YTKLWYVPHP LQPQNYCPSI LQSPIYTKLG DVPHPLQPQD YEPSKLQSLI 420 YIKLGNVPDA NLYCGECNNW QSAIKKKIST DEVDKSFRQI MSNSENQATN YRILELRMVH 480 HPQIIENLES VVYPFQPQDS TLQPLMYTKF GDALHNIECN ELQSSFGDTD SSLTKFLNTN 540 FAYQDGFKES NLPNSLGMVY HGDSGVSNYT NTEVQYASAL AIGNTLQCSL

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MPRNRVGSYD MSGLLPTSKA INTPSLFSSA SQSSPSRQRG YIQHDNNMSR DKTTPLSVPV  60
GYRFLDFLPT EEELVNHYLK KKIHGANDSE INQIIPEIDL CKYEPLSFLV TKDSTFLNSN  120
HCPFLNMIHY EQALLGTETE AHDMEWFFFT RKAYKYNKSS RSNRSTKKGY WKISGKERGI  180
KARRSKAVIG MKKTLTFYQG RVPKSKKTSW VIHEYYLPGN GVIQKQAQGD FVICRLKIRS  240
DKKDSLVRNE GQSDSASVSE MNQEGNVELL FHQPQPQDCC SSALRSPVSQ ELEAVLQTNN  300
TNDDCNELQS PFGDSDSCHQ DGNEVSTCDE YETVYDVFPQ LRDPPEENLD SLFGPHQPQD  360
YCPSILQSPI YTKLWYVPHP LQPQNYCPSI LQSPIYTKLG DVPHPLQPQD YEPSKLQSLI  420
YIKLGNVPDA NLYCGECNNW QSAIKKKIST DEVDKSFRQI MSNSENQATN YRILELRMVH  480
HPQIIENLES VVYPFQPQDS TLQPLMYTKF GDALHNIECN ELQSSFGDTD SSLTKFLNTN  540
FAYQDGFKES NLPNSLGMVY HGDSGVSNYT NTEVQYASAL AIGNTLQCSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-31	NAC family protein