PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002136.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 1321aa MW: 141280 Da PI: 4.2716

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002136.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ rH r H Rmu_sc0002136.1_g000011.1 18 HVCHKCGWPFPNPHPSARHRRAH 40 79******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1321 aa Download sequence
MDHQDLRRAH SSGHESHHVC HKCGWPFPNP HPSARHRRAH KKICGTVEGY KVAGAEGSAQ 60 LSVSDDEQHS DEDPKTPGSK VLERSVYERG SGGIGQGSIK SDDGVFSDAV QEFSDSGSAA 120 WTGEGFGDAP GSAPNVERGA KSDLNAIPFH NDGGTKEDKS NPNKYEMVTD ASEDMKKTDV 180 TDSMIESCLT SVDQEAEVTG ITATNLDRNI TSGTTSISDG RTEESNVLLG DSNGLHPIKY 240 EMVTDASEAI KKTGATDSMI ESCLTSVDQD AEVTGITATN LDRNMILPNK VAGETVEGGS 300 KLEGSNEMTS EYVRDDELVP SEKEHTDGFD MHIPQIDAPP EVESVAHVNT FVDTAEKKVD 360 NTDGIQYLSP DKVIESRNGK EEENANANVH VLSVPDDIHV VDDPVLMLEG FRNHKGKQLD 420 QVTFLDSLEQ FDDKENDVKQ PVFNESLNIF QSSHLSGGSV VSSDMHDLEA SLEPDLGSSK 480 PMIKSVPVKD EANMSETEIK MFKNQSSDEI GALADAVMPQ IAKTYMVGLP EGQESYDKSN 540 ESLQVNFAAS DAGIDQTTHS VGPENNERDG NCDGNGESGD HSRKVTAEEN LVANPIATVQ 600 SAEGQESYEK SNESGQESHN LMRNCDGSGE SGDHSRKVTA EENLVANPTA TVQSAEGQVS 660 YEKSNESLQV NFAAGDAGID ETTHSVGPDD NEKDGNCDGS GESGDYSRKG PAEVNLVAAP 720 IGTVQSADHY ENQIYPAANL HKVDASEYEK GVIEKCNEIG DAGYNENAET SNLCGDDKSK 780 GVAENFSTDP ASNLQSVSCL SELQVNPVTN LRESGDAAGD CEKDKTEKCD VTGYDGDHER 840 AEKYASSGEE ISKRSTEKTF VEDSTTNLES IITLSDSQVH PAGKLPDVDG SADRDEGEIE 900 KFVISGNESM EGSVEENILV KSELTPESSA NLTGSKAIVE DAANGSRMEL VETSGRDLDS 960 GSNSSKVAGK ILSDAQQDVL ENEIACNDKI LKEVDAGVAA GSDHGQNVES FQKSSEDHGK 1020 KEPGFSALDT ESSVQSFIAS EGNGSQEVHA VASGITSQSL LEEGNNYLVR QQPSSTAIDV 1080 DSNSPTDSLE ANWGSFSVLS MQSDAETVPH THSQSSLDEN SVLKKSKVEC ESQYSGKSDM 1140 FEAPSFMTLV EPRGGDDQKA TGSEILTAVQ NPEQPKPASL QTGWFPSMTH VVNESPGRKK 1200 NEEIIAKVTN RSTGRQHIPL KNLLGEASSE SNGKPLNQKE SLAPAPASAP QKDDKAAMVS 1260 GPVTTTVSSI LNPESPTGQV AKKETAKEWN SPARYPSDTK SEKRKVKGRS WAQFVCCASV 1320 N

Sequence ? help Back to Top

Protein Sequence Length: 1321 aa Download sequence

MDHQDLRRAH SSGHESHHVC HKCGWPFPNP HPSARHRRAH KKICGTVEGY KVAGAEGSAQ  60
LSVSDDEQHS DEDPKTPGSK VLERSVYERG SGGIGQGSIK SDDGVFSDAV QEFSDSGSAA  120
WTGEGFGDAP GSAPNVERGA KSDLNAIPFH NDGGTKEDKS NPNKYEMVTD ASEDMKKTDV  180
TDSMIESCLT SVDQEAEVTG ITATNLDRNI TSGTTSISDG RTEESNVLLG DSNGLHPIKY  240
EMVTDASEAI KKTGATDSMI ESCLTSVDQD AEVTGITATN LDRNMILPNK VAGETVEGGS  300
KLEGSNEMTS EYVRDDELVP SEKEHTDGFD MHIPQIDAPP EVESVAHVNT FVDTAEKKVD  360
NTDGIQYLSP DKVIESRNGK EEENANANVH VLSVPDDIHV VDDPVLMLEG FRNHKGKQLD  420
QVTFLDSLEQ FDDKENDVKQ PVFNESLNIF QSSHLSGGSV VSSDMHDLEA SLEPDLGSSK  480
PMIKSVPVKD EANMSETEIK MFKNQSSDEI GALADAVMPQ IAKTYMVGLP EGQESYDKSN  540
ESLQVNFAAS DAGIDQTTHS VGPENNERDG NCDGNGESGD HSRKVTAEEN LVANPIATVQ  600
SAEGQESYEK SNESGQESHN LMRNCDGSGE SGDHSRKVTA EENLVANPTA TVQSAEGQVS  660
YEKSNESLQV NFAAGDAGID ETTHSVGPDD NEKDGNCDGS GESGDYSRKG PAEVNLVAAP  720
IGTVQSADHY ENQIYPAANL HKVDASEYEK GVIEKCNEIG DAGYNENAET SNLCGDDKSK  780
GVAENFSTDP ASNLQSVSCL SELQVNPVTN LRESGDAAGD CEKDKTEKCD VTGYDGDHER  840
AEKYASSGEE ISKRSTEKTF VEDSTTNLES IITLSDSQVH PAGKLPDVDG SADRDEGEIE  900
KFVISGNESM EGSVEENILV KSELTPESSA NLTGSKAIVE DAANGSRMEL VETSGRDLDS  960
GSNSSKVAGK ILSDAQQDVL ENEIACNDKI LKEVDAGVAA GSDHGQNVES FQKSSEDHGK  1020
KEPGFSALDT ESSVQSFIAS EGNGSQEVHA VASGITSQSL LEEGNNYLVR QQPSSTAIDV  1080
DSNSPTDSLE ANWGSFSVLS MQSDAETVPH THSQSSLDEN SVLKKSKVEC ESQYSGKSDM  1140
FEAPSFMTLV EPRGGDDQKA TGSEILTAVQ NPEQPKPASL QTGWFPSMTH VVNESPGRKK  1200
NEEIIAKVTN RSTGRQHIPL KNLLGEASSE SNGKPLNQKE SLAPAPASAP QKDDKAAMVS  1260
GPVTTTVSSI LNPESPTGQV AKKETAKEWN SPARYPSDTK SEKRKVKGRS WAQFVCCASV  1320
N