PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002141.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 246aa    MW: 27004.8 Da    PI: 4.4354
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002141.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.71.5e-1150107657
                                S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   6 tftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                t+t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFq  +a+e++
  Rmu_sc0002141.1_g000004.1  50 TPTPAQLRILQELYYDraLKNPTPEQIQGICLHLkpygQIENKNVFFWFQSLKARERQ 107
                                79************96579*************************************96 PP
2Wus_type_Homeobox78.68.5e-2648108564
          Wus_type_Homeobox   5 RWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                  tPtp Q++iL+ely+ ++l++P+ e+iq i  +L+ yG+ie+kNVf+WFQ  kaRerqk
  Rmu_sc0002141.1_g000004.1  48 QGTPTPAQLRILQELYYdRALKNPTPEQIQGICLHLKPYGQIENKNVFFWFQSLKARERQK 108
                                569************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQQVEDGGN NQAAGSSANT PIRPTNNQGT PTPAQLRILQ  60
ELYYDRALKN PTPEQIQGIC LHLKPYGQIE NKNVFFWFQS LKARERQKLK EIRNVRVGGS  120
LDLKFGSTSS TDGVRSIDLN FGSTDSTGDD GSIDLTLGSC VDYGVDPYSS SPFNANTNTT  180
YFCTTGGQSF MEQRGGDHQE VETLPLFPVH GEDVLGNPKI TSEEGSAFGY YFGGSDGYNI  240
VSPVSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-20WOX family protein