PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002150.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 217aa MW: 23837.4 Da PI: 8.2944

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002150.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.3	6.3e-39	19	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++l Rmu_sc0002150.1_g000004.1 19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVAHIFTL 102 7*********************9989**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+aela+++++ Rmu_sc0002150.1_g000004.1 103 QQQVVNLQAELAYVQAR 119 ***********9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MSRGSTNVEN NGGGSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN 60 ASKLLLRIPA HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYVQARL 120 ATFQRLPPPP PPPQPQSLHS LANVVVSSSD LVPISNLMMH FDPLQTQQCA GQEMTSLFNP 180 LDQELIDGED LQILAREFVS RYLPGVRFRP PGPHQNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	2e-66	LBD family protein