PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002170.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 497aa MW: 57051.9 Da PI: 4.4101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002170.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	9.9e-15	263	347	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt++e+ +L++a ++ r ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk++ + t ++ s+++yf++ Rmu_sc0002170.1_g000002.1 263 WTEHETFVLLDAWGDRFLRRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERVKFAE-TGGAISKWVYFKK 345 ***********************************762678*****************999998.689999***** PP trihelix 85 le 86 ++ Rmu_sc0002170.1_g000002.1 346 MD 347 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MQSGELGLWF SSPFLLHLDW AWVWTFWEVA CLALLPRTCS YDVAMAGLSV ATYTKRVLGV 60 KMFRTVKSPE SFDLSSPQRL GLFSVVDDDD CSDSWTWLIY CVEMDDTEDD ARYPPNVYGA 120 NHPQGYDSAQ PPKLPARSGS FSRPVSHYDD DEDDEDEEDE ELGEEEGHNG QNGYPSVHKD 180 VGDDDDDDDE EGDDDEDEDD EEDDKSKVFK RIDDDDLQKH PKKRKLKSLI SSYEFAPRVP 240 APLVPALPAP RQSHGGRNAL TDWTEHETFV LLDAWGDRFL RRGKKSLRSE EWQEVAEKVS 300 EVSKIERTDT QCRNRLDTLK KKYKKERVKF AETGGAISKW VYFKKMDMLM SSPQQQAGLS 360 CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP GNSESAEGVE DESDGLPPKK RRFGRDNDER 420 SSFRLLADSI QKFSDIYEKI EKSKRQQMVE LEKMRMDFHR DLEMQKRQIM ERAQAEIAKM 480 RQADDEENDV SAENASG

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MQSGELGLWF SSPFLLHLDW AWVWTFWEVA CLALLPRTCS YDVAMAGLSV ATYTKRVLGV  60
KMFRTVKSPE SFDLSSPQRL GLFSVVDDDD CSDSWTWLIY CVEMDDTEDD ARYPPNVYGA  120
NHPQGYDSAQ PPKLPARSGS FSRPVSHYDD DEDDEDEEDE ELGEEEGHNG QNGYPSVHKD  180
VGDDDDDDDE EGDDDEDEDD EEDDKSKVFK RIDDDDLQKH PKKRKLKSLI SSYEFAPRVP  240
APLVPALPAP RQSHGGRNAL TDWTEHETFV LLDAWGDRFL RRGKKSLRSE EWQEVAEKVS  300
EVSKIERTDT QCRNRLDTLK KKYKKERVKF AETGGAISKW VYFKKMDMLM SSPQQQAGLS  360
CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP GNSESAEGVE DESDGLPPKK RRFGRDNDER  420
SSFRLLADSI QKFSDIYEKI EKSKRQQMVE LEKMRMDFHR DLEMQKRQIM ERAQAEIAKM  480
RQADDEENDV SAENASG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	225	KHPKKRK
2	281	325	RRGKKSLRSEEWQEVAEKVSEVSKIERTDTQCRNRLDTLKKKYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-77	Trihelix family protein