PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002187.1_g000040.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 193aa    MW: 21631.3 Da    PI: 9.7869
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002187.1_g000040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.4e-153191357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+ +t++q+++L+el+     + p+ e+ ++++ +l    +++ ++V++WF N+Ra+ekk
  Rmu_sc0002187.1_g000040.1 31 TRWLPTTDQIRILKELYDDkgVKSPTVEQVQRITLQLkwygQIEFKNVYFWFVNQRAREKK 91
                               7*****************6579**************************************8 PP
2Wus_type_Homeobox88.28.3e-293093365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               +tRW Pt++Qi+iL+ely+ +G+++P+ e++qrit +L+ yG+ie kNV++WF N++aRe++k+
  Rmu_sc0002187.1_g000040.1 30 NTRWLPTTDQIRILKELYDdKGVKSPTVEQVQRITLQLKWYGQIEFKNVYFWFVNQRAREKKKK 93
                               79****************999****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MEPQNRHPTE DGGSNKAAES SPNMHCKQCN TRWLPTTDQI RILKELYDDK GVKSPTVEQV  60
QRITLQLKWY GQIEFKNVYF WFVNQRAREK KKKRKLTSDV QVPKQRSELV GGSNNLNFGS  120
TSSAGVGGSI MEQRGEDHQE IKTLPLFPMH SEDIFGNMKT TSDGGGGQGG GSYISLELSL  180
SYEGKAGKSF RSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996EKKKKRKL
29095KKKKRK
39196KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-26WOX family protein