PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002236.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 280aa    MW: 32173.8 Da    PI: 8.8617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002236.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1625107998
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                +vl +g l +p++f+e+++gk ++  + +l+++ g +W v +  ++ sg+++l+kGWk+Fv  n+Lk g+ vvF ++g+ +f  
  Rmu_sc0002236.1_g000010.1  25 SVLLRGKLKIPRDFCENFEGKMPQ--QCRLQTLYG-TWHVDV--KNISGEFFLKKGWKKFVVGNRLKLGECVVFDYIGHAKF-- 101
                                6788899********999988655..699988877.8*****..*********************************98777.. PP

                                EEEEE- CS
                         B3  93 vvkvfr 98 
                                +v ++ 
  Rmu_sc0002236.1_g000010.1 102 YVEIYG 107
                                888875 PP
2B335.41.9e-11193275794
                                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
                         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                                + +v+k   l  p++f++++ ++  +  +++l+      W+v  i   ++++  +++GW +F+++n+L+egDf+ F+l+ ++ +
  Rmu_sc0002236.1_g000010.1 193 QTHVTKGP-LLTPRSFMRNIHKP--K--KVKLQV-GDMAWDVIWI-HPYQQSSRFSGGWLHFASQNRLQEGDFCDFELIsKTiE 269
                                45555555.666*****888644..4..566554.4588999986.455555569**********************9934455 PP

                                EE..EE CS
                         B3  89 efelvv 94 
                                 + ++v
  Rmu_sc0002236.1_g000010.1 270 VAVMKV 275
                                554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGSCSRRRED EDSEVPGFYK CVDYSVLLRG KLKIPRDFCE NFEGKMPQQC RLQTLYGTWH  60
VDVKNISGEF FLKKGWKKFV VGNRLKLGEC VVFDYIGHAK FYVEIYGHNH CSKSSKAMRS  120
ERLLDDDSDD HNVVFVDSDS DSEPQNSEIS LESETECPRK SGYGKKLSRR GRAGNSATIR  180
CFGNPCFSVK ICQTHVTKGP LLTPRSFMRN IHKPKKVKLQ VGDMAWDVIW IHPYQQSSRF  240
SGGWLHFASQ NRLQEGDFCD FELISKTIEV AVMKVSIRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-11B3 family protein