PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002239.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 185aa    MW: 21229.5 Da    PI: 4.8889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002239.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.16e-2261362128
                        NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknrat 78 
                                p+G+rF Ptd elv +yL+++ v g+++++ ++++++ d y   ePw +      + + + + +yfF++r+k ++t +   +++
  Rmu_sc0002239.1_g000009.1   6 PVGVRFYPTDRELVGHYLHNRaVMGDQFQT-KFVSDCpDFYGQnEPWVIWdFyggNKSRNVEALYFFTHRSKLNPTAECFDQKV 88 
                                89****************998466666777.88999999996549***9633333222234466******************** PP

                        NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 sg+W+++ ++  v + +++++g+ + + +  g   + ++  W+m+ey++
  Rmu_sc0002239.1_g000009.1  89 GSGTWREQHSEDVVAK-DDSVMGISRHFLYE-GGCDSHQNEAWLMQEYQI 136
                                ******9988666655.9999******9887.55556689********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MELGFPVGVR FYPTDRELVG HYLHNRAVMG DQFQTKFVSD CPDFYGQNEP WVIWDFYGGN  60
KSRNVEALYF FTHRSKLNPT AECFDQKVGS GTWREQHSED VVAKDDSVMG ISRHFLYEGG  120
CDSHQNEAWL MQEYQILTTT HNNDATDQEL VLCTLRKNPE KLPLPTTATA KNGNDVEDYC  180
SRSST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.19e-17NAC family protein