PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002239.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 355aa    MW: 38755.8 Da    PI: 4.6112
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002239.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Rmu_sc0002239.1_g000019.1 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                                *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MAAVNPQPLQ ARRPYEDHVA AGSFQMEDDE GGEYEDGGGD EAIMEEEEEE EVHASSAAAR  60
GGVSVLTAAT RTSELTLSFE GEVYVFPAVT PQKVQAVLLL LGGRDAPTGV PRVEMSYDQN  120
TRGVGDTPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE  180
NSSGSGWDSA QSSLQDGTPR PETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRNLSMDHI EPGTPLEIKP SIVECEFSGN QDGHGAREDP SKSVIEGSND  300
ASVNLDVENF QESAEDLTNA LPMGIVSSTN DVEQEPLLEL TNTSDTDLDI PTNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131DTPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-67GATA family protein