PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002239.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 290aa    MW: 31201.2 Da    PI: 5.0443
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002239.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.5e-17199235135
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Rmu_sc0002239.1_g000022.1 199 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGV 235
                                *********************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MDMQNQIPAG GGNDDDAPGP ESIDNAHIHY EGHTLEDGGV VVEEATSDDV YIHGGNTDLD  60
MAIPYEGSSQ LTLSFRGQVY VFDSVTPDKV QAVLLLLGGS ESSSGAQGVD MTTQNQRAIT  120
EFPTGCNQPH RAASLNRFRQ KRKERCFDKK VRYSVRQEVA LRMQRNKGQF TSSKKSDGDY  180
SWGSGQESRQ DDSNAETSCT HCGTSSKCTP MMRRGPSGPR SLCNACGLFW ANRGVLRDIS  240
KRPPGHSLTA GEQGEAEADD SDTGTAIVVH NAADAVPLSN GDNKALVAET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-82GATA family protein