PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002260.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 210aa MW: 23085.2 Da PI: 10.2542

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002260.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.8	1.7e-29	47	154	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssase 72 a+g+kdrh k++T++g+Rd +vRl a++a++f+d qd+LG+ ++sk+++WL+++ak ai+el ++ + ss Rmu_sc0002260.1_g000006.1 47 ATGRKDRHNKVCTAKGPRDHSVRLTAHTAIQFYDAQDQLGYYRPSKAVDWLIKKAKVAIDELDELpswnpnlisvqkT-SS--P 127 589**************************************************************6666655554321.11..1 PP TCP 73 ceaesssssasnsssg............k 89 + + ss + ++n + + Rmu_sc0002260.1_g000006.1 128 TVPISSAQDKQNV--SlhfsmveapnslS 154 1111222222211..12222222222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MGESHNNLHH HAMTSSSATS QLGLGIRTAS SSTASEIVEA RGHILRATGR KDRHNKVCTA 60 KGPRDHSVRL TAHTAIQFYD AQDQLGYYRP SKAVDWLIKK AKVAIDELDE LPSWNPNLIS 120 VQKTSSPTVP ISSAQDKQNV SLHFSMVEAP NSLSANRRGA MVGSSRVAEP VNQNSSNFQQ 180 VRMVWRPKLL IFICLQLPLI EVGLAAEVVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	8e-42	TCP family protein