PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002290.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 171aa    MW: 19610.3 Da    PI: 8.7087
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002290.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-181669356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               k+ ++t++q++ Le+ F +++++  +++  LAk+lg++ rqV +W+qN+Ra++k
  Rmu_sc0002290.1_g000010.1 16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWK 69
                               56679************************************************9 PP
2HD-ZIP_I/II106.32.3e-3416107293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kk+rl+++qvklLE+sF++++kLep+rK  la++Lg+ +rqva+W+qn+RAR+kt+ lE  y+a++ ++++  +e+++Lek+ve
  Rmu_sc0002290.1_g000010.1  16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWKTQSLELGYNAIQVQLETALAEKRKLEKDVE 99 
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L+ el++
  Rmu_sc0002290.1_g000010.1 100 RLKGELNR 107
                                ***99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MDFFQTPSNK NQFHHKKKRL TQDQVKLLER SFSSDNKLEP DRKLLLAKQL GIPARQVAIW  60
YQNKRARWKT QSLELGYNAI QVQLETALAE KRKLEKDVER LKGELNRVHE LLLDLNNQRQ  120
AGGDNHPVVC SVFSASSDQE GAASSSLQLG DHVVNHEVKE FEELYACLIG M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-35HD-ZIP family protein