PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002292.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 358aa MW: 40185 Da PI: 8.7174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002292.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	20	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+deel+++yL kkv ++++++ ++i+evd++k+ePw+Lp kk+k +ekewyfFs rd+ky+tg r+nrat++gyW Rmu_sc0002292.1_g000011.1 20 LPPGFRFHPSDEELISYYLLKKVMDSNFTC-RAIAEVDLNKCEPWQLPgKKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYW 102 79*************************9.89***********889999************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkd+e++s+ + +l g+kktLvfy+grapkg+k++Wvmheyrle Rmu_sc0002292.1_g000011.1 103 KATGKDREIYSSkTCSLLGMKKTLVFYRGRAPKGVKSNWVMHEYRLE 149 ******97455679*************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MNLGRHLDQL NGVHLHDNQL PPGFRFHPSD EELISYYLLK KVMDSNFTCR AIAEVDLNKC 60 EPWQLPGKKA KMGEKEWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE IYSSKTCSLL 120 GMKKTLVFYR GRAPKGVKSN WVMHEYRLEG RFAYNYLPRN SQEEWVISRV FQKAKKSNGP 180 ESKKTRMIGS SGYPAEPSSP SSSSVSLPPL FDSSPYYPTV PFSNGNGSLT DRDSCSHDNR 240 TPREHVSCFS TNSDSANTGT FNHLMTSLDL APPPQPQTSL HLSGGFGGLS DFPSLRSLQE 300 NLHLPFFFPQ GLQPHQPYSG AGGSFDLGDW SSLGNWRGAA AEEPRAVGPT EADCMWTY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MNLGRHLDQL NGVHLHDNQL PPGFRFHPSD EELISYYLLK KVMDSNFTCR AIAEVDLNKC  60
EPWQLPGKKA KMGEKEWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE IYSSKTCSLL  120
GMKKTLVFYR GRAPKGVKSN WVMHEYRLEG RFAYNYLPRN SQEEWVISRV FQKAKKSNGP  180
ESKKTRMIGS SGYPAEPSSP SSSSVSLPPL FDSSPYYPTV PFSNGNGSLT DRDSCSHDNR  240
TPREHVSCFS TNSDSANTGT FNHLMTSLDL APPPQPQTSL HLSGGFGGLS DFPSLRSLQE  300
NLHLPFFFPQ GLQPHQPYSG AGGSFDLGDW SSLGNWRGAA AEEPRAVGPT EADCMWTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	1e-96	NAC family protein