PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002296.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 242aa    MW: 27607.4 Da    PI: 8.4828
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002296.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-211372357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Rmu_sc0002296.1_g000004.1 13 SRWCPTPEQLMILEEMYRAgVRTPNASQIQQITAQLsfygKIEGKNVFYWFQNHKARDRQ 72
                               8*****************99*************************************996 PP
2Wus_type_Homeobox120.85.7e-391173264
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
  Rmu_sc0002296.1_g000004.1 11 SSSRWCPTPEQLMILEEMYRAGVRTPNASQIQQITAQLSFYGKIEGKNVFYWFQNHKARDRQK 73
                               689***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MSPAANFSAS SSSRWCPTPE QLMILEEMYR AGVRTPNASQ IQQITAQLSF YGKIEGKNVF  60
YWFQNHKARD RQKLRRKLCK QLQLQQQQLY HNYYHCQHHH QQQLMLNQQS LLGYLDQSPS  120
ASSVLHQPLC CHHHSLSAGF LPQVGVEDAM MNYTRKVHEI PAAAERLEME KSVLNMYGHD  180
WMMTTKKTMD VGPPASPACC TRSAAATPRP LKTLQLFPIK SPNLRAEDHE EEESTSTPSN  240
PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-34WOX family protein