PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002322.1_g000065.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 666aa MW: 73826.2 Da PI: 6.5084

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002322.1_g000065.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	85	8.1e-27	11	87	36	118
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gs+iLynr +v+ fr+D ++w kkk E h LK +g +vl+cyYa++e+n++fqrr+yw +e++l++i lvhylev+ Rmu_sc0002322.1_g000065.1 11 GGSIILYNRNVVKGFRNDAHEWEKKK------ESHATLKEDGANVLHCYYAKGEKNENFQRRIYWKIESDLKHIALVHYLEVQ 87 69*********************7......78999*****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MVESSGGGTA GGSIILYNRN VVKGFRNDAH EWEKKKESHA TLKEDGANVL HCYYAKGEKN 60 ENFQRRIYWK IESDLKHIAL VHYLEVQGHR SNDDPQLEDV FDSLKSFDTY VSHQPANPFF 120 PQVPESPNIP FSENTWQEGE TPRRQLPANF ENDPRLPIFD ELFFDQPVDD QPFPDIFLAR 180 DNHAKDVTAN DDAYFMSAPA DDMDVDNATN MLPSVYSIFE FAPNWAYQTT KQKVLIYGKF 240 LTSQEAQSCH WSCVFGEAEV PATFKGEGVL VCTTPEHKAG RVSFYVKNST KSVCSKEEEF 300 EFRIDQSQVV DAKSDHSRYR NEIYKKSLEE LLCPIPSPPT SDSLYAERNS NLTYDKTELP 360 VDKLPKWLVQ KVNAGGKGLC VTDKNGMSAL HYAAILGYDW ILKPTITAGI SVNSAAVNGW 420 TAIHWAAHYG RKDTVGMLLL LGADAGLLTG KGDTAAQLAS SEGHLELSYF LSERAKIFQP 480 SSHSLDIRRA LVLSQNQDGG NGKQKQASCM SIPGGTTHSQ SGSSPAMSYL FQVVLMGAEN 540 AHTSWALKKL TYPASDPIPD YFIYVRPGHL LCVRPDHLLL LQIQHQTRSP PSANRSGIRL 600 QITISFPVAQ CLASLSPRPV GLASPLPTPV RLRSTSPHSV AQISNSVPLS PVACLDPSSV 660 YSVLLR

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MVESSGGGTA GGSIILYNRN VVKGFRNDAH EWEKKKESHA TLKEDGANVL HCYYAKGEKN  60
ENFQRRIYWK IESDLKHIAL VHYLEVQGHR SNDDPQLEDV FDSLKSFDTY VSHQPANPFF  120
PQVPESPNIP FSENTWQEGE TPRRQLPANF ENDPRLPIFD ELFFDQPVDD QPFPDIFLAR  180
DNHAKDVTAN DDAYFMSAPA DDMDVDNATN MLPSVYSIFE FAPNWAYQTT KQKVLIYGKF  240
LTSQEAQSCH WSCVFGEAEV PATFKGEGVL VCTTPEHKAG RVSFYVKNST KSVCSKEEEF  300
EFRIDQSQVV DAKSDHSRYR NEIYKKSLEE LLCPIPSPPT SDSLYAERNS NLTYDKTELP  360
VDKLPKWLVQ KVNAGGKGLC VTDKNGMSAL HYAAILGYDW ILKPTITAGI SVNSAAVNGW  420
TAIHWAAHYG RKDTVGMLLL LGADAGLLTG KGDTAAQLAS SEGHLELSYF LSERAKIFQP  480
SSHSLDIRRA LVLSQNQDGG NGKQKQASCM SIPGGTTHSQ SGSSPAMSYL FQVVLMGAEN  540
AHTSWALKKL TYPASDPIPD YFIYVRPGHL LCVRPDHLLL LQIQHQTRSP PSANRSGIRL  600
QITISFPVAQ CLASLSPRPV GLASPLPTPV RLRSTSPHSV AQISNSVPLS PVACLDPSSV  660
YSVLLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	6e-49	CAMTA family protein