PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002328.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 299aa    MW: 33772.7 Da    PI: 5.8491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002328.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-182168148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT +Ed ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Rmu_sc0002328.1_g000003.1 21 KGPWTLDEDTLLIHYIANHGEGHWNALAKCAGLKRTGKSCRLRWLNYL 68
                               79********************************************97 PP
2Myb_DNA-binding53.46e-1774117146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T++E++l++++++++G++ W++Ia++++ gRt++++k++w++
  Rmu_sc0002328.1_g000003.1  74 RGNLTPQEQLLILELHAKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                                7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAGVANSVYT SPNEEENEMR KGPWTLDEDT LLIHYIANHG EGHWNALAKC AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHA KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES DSKRFLDAVR CFWMPTLRQK MEQTSSLSLD PPSSSSSHSN YLTSQISIAP  180
SLSTSPQTCS VPSSPPSKVV SHVSDYSPIG TSSPSHNSLS SDSLISQLPQ ITEQPASSSY  240
AFEALNDNYY MDYDMEGFSL DPVSEMASFD TSQFDCQMAE SDWIPSNYMT DTLWNMQGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-83MYB family protein