PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002348.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 266aa    MW: 29357.9 Da    PI: 6.3857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002348.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               rg W++eEde l+ + + +G+g +W   +++ g++R++k+c++rw++yl
  Rmu_sc0002348.1_g000005.1 14 RGQWSPEEDEALKTYLETHGTGgNWIHLPQKAGLRRCGKSCRLRWLNYL 62
                               89*********************************************97 PP
2Myb_DNA-binding50.64.3e-1669111246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g +T+eEd ++ ++ +q+G++ W+ Ia+ m+ gRt++++k++w++
  Rmu_sc0002348.1_g000005.1  69 GGFTEEEDNIICNLYTQMGSR-WSYIAAQMP-GRTDNDVKNYWNT 111
                                569******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGRAPCCDKA SVKRGQWSPE EDEALKTYLE THGTGGNWIH LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC NLYTQMGSRW SYIAAQMPGR TDNDVKNYWN TKLKKRLFSK  120
NPNASSLTLP CVPKLETNDE FQTQIPPTLM LSDYNSGLNA YDQSLSLKPN PLHNSKLTGL  180
SQFGASSVSM SQDGSSVSDS SSIAAVDHGL LHGNSFINED AAGIPMDFGF GGLSCDVVNQ  240
MWFGEKANEV VHPTCSTGLD GDFFFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-72MYB family protein