PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002348.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 342aa    MW: 37882.6 Da    PI: 7.9401
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002348.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07119140426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                + C++f++ G C  Gd+C FaHg
  Rmu_sc0002348.1_g000009.1 119 SACPDFRK-GNCAKGDSCEFAHG 140
                                67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MMLGEPSRLA PTLKVAPWDP FDDPTSGLGS PFSVRSPSAN AGFLDSLSAL HRFLPSNESD  60
SLSDDPDMPL ISCDQFRMFE FKVRRCARGR SHDWTECPYA HPGEKARRRD PRKYHYSGSA  120
CPDFRKGNCA KGDSCEFAHG VFECWLHPAR YRTQPCKDGL ACHRRVCFFA HTPEQLRVLP  180
GHSPRTHGPG FFDSPTSPPI SPPSDSPPMS PNSPQLRLNS VSELVASMRN FKLAKMQMST  240
TPPSWVGSGF ASPRGPPLRP DFFSLPNTPT RNSGRSGPGP FDLWEHSLVE EPAMERVESG  300
RDLRARMYAK LSKDNSMGRV DSGGFSGPDV EWVSQLVSEG ET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-108C3H family protein