PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002348.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28725.2 Da    PI: 7.3437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002348.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18107161256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq  +Le+ F+++ +++ +++ eLA++l+L  rqV vWFqNrRa+ k
  Rmu_sc0002348.1_g000020.1 107 RKKLRLTKEQSATLEDSFKQHTTLNPKQKIELARNLNLRPRQVEVWFQNRRARTK 161
                                78889************************************************98 PP
2HD-ZIP_I/II119.61.7e-38107194188
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq+++LE+sF+++++L+p++K elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk++ ++lkeen+rL+ke 
  Rmu_sc0002348.1_g000020.1 107 RKKLRLTKEQSATLEDSFKQHTTLNPKQKIELARNLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCSETLKEENRRLHKEL 190
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLr 88 
                                +eL+
  Rmu_sc0002348.1_g000020.1 191 QELQ 194
                                **98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGFDDITAEL GLSLGCHDKP ANHDHDHHQN QKKPHLKYDQ LLPSDLTLGP SDEAEPRGSN  60
SSSPSGAVSS FSNSSSFKRL DRDLLCSGEE VERVSEELYE DQAGSPRKKL RLTKEQSATL  120
EDSFKQHTTL NPKQKIELAR NLNLRPRQVE VWFQNRRART KLKQTEADCE LLKKCSETLK  180
EENRRLHKEL QELQLMKQTP TAPFYMQFPT ATLTVCPSCS ERIGNGTSTP IAGDHHHGIS  240
KPPLFNPFTH PSTAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-62HD-ZIP family protein