PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002402.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 445aa MW: 49775.5 Da PI: 5.2067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002402.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	223	274	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A++++++L+ Rmu_sc0002402.1_g000006.1 223 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIDFVRELE 274 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEKEENNYSA AFLPTNFNGL DYTLDHHHDE DQQQQQMNSS HVDLTSSSHE NNNGMINYLM 60 NDHHHDQLQL QHQQPQQTQH PPPAGFSGAS TTSFDKLSFA DVMQFADFGP KLALNQTKIS 120 EEESGIDPVY FLKFPVLNDK LDDDDDQSLM VPRQDGPDSH QEERFTKSGE EEETRGVSGS 180 TNSVQLRFLG DDVPNPRGGL PELPKNKRKR PRSTKTSQEV ESQRMTHIAV ERNRRKQMNE 240 HLRVLRSLMP GSYVQRGDQA SIIGGAIDFV RELEQLLQCL ESQKRRRLLG EAPPPRQVGA 300 DPTAAANMAV LPSQPDHQGG GGVPFFPAPN LPLNPNDPIK FVDFETGLRE ETAEIKSCFA 360 DVEVKVLGGD AMIKILSQRR PGQLIKAIAA LEDLQLKILH TNITTIEQTV LYCFKVASDS 420 RFTAEDIASS VQQIFSFIHA NTASM

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEKEENNYSA AFLPTNFNGL DYTLDHHHDE DQQQQQMNSS HVDLTSSSHE NNNGMINYLM  60
NDHHHDQLQL QHQQPQQTQH PPPAGFSGAS TTSFDKLSFA DVMQFADFGP KLALNQTKIS  120
EEESGIDPVY FLKFPVLNDK LDDDDDQSLM VPRQDGPDSH QEERFTKSGE EEETRGVSGS  180
TNSVQLRFLG DDVPNPRGGL PELPKNKRKR PRSTKTSQEV ESQRMTHIAV ERNRRKQMNE  240
HLRVLRSLMP GSYVQRGDQA SIIGGAIDFV RELEQLLQCL ESQKRRRLLG EAPPPRQVGA  300
DPTAAANMAV LPSQPDHQGG GGVPFFPAPN LPLNPNDPIK FVDFETGLRE ETAEIKSCFA  360
DVEVKVLGGD AMIKILSQRR PGQLIKAIAA LEDLQLKILH TNITTIEQTV LYCFKVASDS  420
RFTAEDIASS VQQIFSFIHA NTASM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	235	RMTHIAVERNRR
2	284	288	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-124	bHLH family protein