PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002405.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 266aa    MW: 29802.4 Da    PI: 5.9027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002405.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-101942341055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++RRd+iN ++  L+ l+P+      +K++ +++Le Av+Y+k L+
  Rmu_sc0002405.1_g000005.1 194 KKRRDKINARLRILQNLVPNG-----TKVDISTMLEDAVDYVKFLE 234
                                9******************97.....8****************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MEALAFIPEF EDEDLIMSQL LANYCSVTND LNHQASISQI PFANCPSSHE CSAAKNMEGI  60
ANLYSRRIMA TNYHNPEPFH PWDASSTTNF FFSQIEENAG MDQVMRNCNV EDHEVVSENS  120
KKRSCSTSVD HVQKNKRNVK SKKTDQKPVL TRNIADSCSS GDDEPMNANS NQDLSPKARI  180
SRGLATNAQS TYAKKRRDKI NARLRILQNL VPNGTKVDIS TMLEDAVDYV KFLELQIKLL  240
SSDELWMYAP VVNNGIGIGI HDLLNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199KKRRDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-42bHLH family protein