PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002407.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 254aa    MW: 27742.5 Da    PI: 4.7638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002407.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1764114155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Rmu_sc0002407.1_g000015.1  64 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 114
                                68*****998.**********854...59*********************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MTTDPSHSET TTTTESTSFN SSSFSSSASP RSPGQNNPSP GDSNPNDEKR VSSKRARESS  60
SKHPVYRGVR MRAWGKWVSE IREPRKKNRI WLGTFSTPEM AARAHDVAAL TIKGDSAILN  120
FPALSGSLPR PDSNSPRDIQ AAAAKAASMD PSPTPPPRPP PSATLSQSSS SSSMADAGTP  180
EELGEIVELP SLGTSYESAE SEFVFEDSVE GWLYPPQPWW QNGYFGEEYG YIRNYDMIMA  240
PEPALCVEDL LWQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.18e-56ERF family protein