PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002409.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 212aa    MW: 22593.8 Da    PI: 7.509
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002409.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-271059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               ri+n++ rqvtfskRrng+lKKA EL +LCdaev v+ifsstgkly+++s
  Rmu_sc0002409.1_g000001.1 10 RIDNSTSRQVTFSKRRNGLLKKARELAILCDAEVGVMIFSSTGKLYDFAS 59
                               8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELAILCD AEVGVMIFSS TGKLYDFAST  60
RSTVSTTTFI ATSTLASIAI TSMAVAIVST LTTTTATITS TATSVATAFP FTRTTITTTT  120
AFAGLSLIDC DAMTVKVLAI HAFDYVSHGL LVAEGDESKS PGPSGLTIVD DLQFDDLAKR  180
SEGPFKHNVV CGPGEPFNES MELDLSRGHN EK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-31MIKC_MADS family protein