PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002416.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 364aa MW: 40976.8 Da PI: 7.4172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002416.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.5e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wk Rmu_sc0002416.1_g000005.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWK 97 579*************************.89***********9888999************************* PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Rmu_sc0002416.1_g000005.1 98 ATGTDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 ******956677*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEEKNDQMDK TDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSIPDSSP PKKLLDRSLP PNDAWAICRI FKKTNSMAQR 180 ALSQSWLSTL PEPTASGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQGSTYSA 240 FDALPYKPNF NPALVGENLP NGGIMFSPIE MSSPPNFNHA LVGDLSNNNT SGSIDFDGSQ 300 QQQFSNGFSI SLAQDQIQQN TNTSQANNNN SHWGAIRSIG FPFSLGSDDP SDMSTSYSTN 360 KCYT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEEKNDQMDK TDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSIPDSSP PKKLLDRSLP PNDAWAICRI FKKTNSMAQR  180
ALSQSWLSTL PEPTASGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQGSTYSA  240
FDALPYKPNF NPALVGENLP NGGIMFSPIE MSSPPNFNHA LVGDLSNNNT SGSIDFDGSQ  300
QQQFSNGFSI SLAQDQIQQN TNTSQANNNN SHWGAIRSIG FPFSLGSDDP SDMSTSYSTN  360
KCYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-103	NAC family protein