PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002425.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 1189aa MW: 131484 Da PI: 5.8641

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002425.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79	5.1e-25	1132	1181	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l dl kyF+ pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Rmu_sc0002425.1_g000001.1 1132 AKITLPDLVKYFDIPIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 1181 78**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1189 aa Download sequence
MYGSRGAMLG GGGLSDVYEV GSKRPRMMES NPYFAVGNSA RGFQPFGGYG GGFQLPAFPV 60 VRLRGLPFNC TDIDIFKFFA GLDIVDVLLV NKGGRFSGEA FVVFAGPLQV ELALQRDRQN 120 MGRRYVEVFT CKRQDYYNAV AAEVSYEGIY DNDFQGSPPP AKSSSKRFND KEKMEYTEIL 180 KLRGLPFSVK RSQIIDFFGD FKVVEDRVHI ACRPDGKATG EAYVEFVSAE EAKKAMSKDK 240 MMIGSRVAEA PVQVPFSLLS AERNDVSLYY FYKQTTCRDQ SAVVQQPGLT GSCSSVYLIW 300 TLRDSLPAPE TKPLHNFPTN RNFSPSASFA TIAAMSESPF DDPIEPTSFD LIVIGTGLPE 360 SVIAAAASTS GKTVLQLDPN DSYGSHFASH TLDDLTSFLN SHATPPPSTA GVTSSEGDYT 420 TLDLNPRSLY SHIETANYAS SEPASRSHHF ASHTLDDLTS FLNSHATPPP STAGVTSSEG 480 DYTTLDLNPR SLYSHIETAN YAPEILAEQS RRFLIDIGGP RVLFCGDKAI ELILKSGVGS 540 YLNFKAVDGN LIWDESSGGL CNVPDSRAAI FKDKGMSLKE KNQLMRFFKL VQQHLAAAAS 600 DGGEQDNESS QISEEDLETP FVDFLTTRLP HKIKSIILYS IAMVDYDQDN SKVCKSILKT 660 RDGISRLALY QKSVGRFPDA NGAFLYPMYG HGELSQAFCR RAAVKGCLQV LRRPVISLLM 720 DKDSGQYKGV RLVSGQVLLS HRLVMDPTFT VPLPPASSPP DLPKESLKGD KRKVARGICI 780 TTRSLKPDIS NLLLVYPPRS LFSEQDTSVR AIQIRGGTDG GGLAVCPSSM FVLYFSALCD 840 DAEQGKRLLH AAMNALLTLP VSGNLESGST VQSEDAELKP TLLWSMLYIQ EITTGQYEHL 900 ISTPMPDGNL NYDDLLDETV LLFQKMYPDE AFFPETPSLP ENPEEDIEGL KLIRSLHVYG 960 LEDGKENEVE REFLFSENGS YVEFRAYPVL RLMKFRVSQV LEGYVNGCWV CILAFHANRS 1020 PNFTCIPSIL SVSRNPQLKL IPNLANDLQM VVETTCIKAE KEPLQKSDEQ TSQGNDENHC 1080 QLRRSLPMLD LDLNRPPCPA TMSESSDNQE SGRQSPGLIE KKNRRAASDR IAKITLPDLV 1140 KYFDIPIVEA SRSLNVGLTV LKKKCREFGI PRWPHRKIKS LDSLIRDLQ

Sequence ? help Back to Top

Protein Sequence Length: 1189 aa Download sequence

MYGSRGAMLG GGGLSDVYEV GSKRPRMMES NPYFAVGNSA RGFQPFGGYG GGFQLPAFPV  60
VRLRGLPFNC TDIDIFKFFA GLDIVDVLLV NKGGRFSGEA FVVFAGPLQV ELALQRDRQN  120
MGRRYVEVFT CKRQDYYNAV AAEVSYEGIY DNDFQGSPPP AKSSSKRFND KEKMEYTEIL  180
KLRGLPFSVK RSQIIDFFGD FKVVEDRVHI ACRPDGKATG EAYVEFVSAE EAKKAMSKDK  240
MMIGSRVAEA PVQVPFSLLS AERNDVSLYY FYKQTTCRDQ SAVVQQPGLT GSCSSVYLIW  300
TLRDSLPAPE TKPLHNFPTN RNFSPSASFA TIAAMSESPF DDPIEPTSFD LIVIGTGLPE  360
SVIAAAASTS GKTVLQLDPN DSYGSHFASH TLDDLTSFLN SHATPPPSTA GVTSSEGDYT  420
TLDLNPRSLY SHIETANYAS SEPASRSHHF ASHTLDDLTS FLNSHATPPP STAGVTSSEG  480
DYTTLDLNPR SLYSHIETAN YAPEILAEQS RRFLIDIGGP RVLFCGDKAI ELILKSGVGS  540
YLNFKAVDGN LIWDESSGGL CNVPDSRAAI FKDKGMSLKE KNQLMRFFKL VQQHLAAAAS  600
DGGEQDNESS QISEEDLETP FVDFLTTRLP HKIKSIILYS IAMVDYDQDN SKVCKSILKT  660
RDGISRLALY QKSVGRFPDA NGAFLYPMYG HGELSQAFCR RAAVKGCLQV LRRPVISLLM  720
DKDSGQYKGV RLVSGQVLLS HRLVMDPTFT VPLPPASSPP DLPKESLKGD KRKVARGICI  780
TTRSLKPDIS NLLLVYPPRS LFSEQDTSVR AIQIRGGTDG GGLAVCPSSM FVLYFSALCD  840
DAEQGKRLLH AAMNALLTLP VSGNLESGST VQSEDAELKP TLLWSMLYIQ EITTGQYEHL  900
ISTPMPDGNL NYDDLLDETV LLFQKMYPDE AFFPETPSLP ENPEEDIEGL KLIRSLHVYG  960
LEDGKENEVE REFLFSENGS YVEFRAYPVL RLMKFRVSQV LEGYVNGCWV CILAFHANRS  1020
PNFTCIPSIL SVSRNPQLKL IPNLANDLQM VVETTCIKAE KEPLQKSDEQ TSQGNDENHC  1080
QLRRSLPMLD LDLNRPPCPA TMSESSDNQE SGRQSPGLIE KKNRRAASDR IAKITLPDLV  1140
KYFDIPIVEA SRSLNVGLTV LKKKCREFGI PRWPHRKIKS LDSLIRDLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-52	Nin-like family protein