PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002449.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 281aa    MW: 32867.9 Da    PI: 4.9664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002449.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.73.8e-22161502128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P ++elv +yLk+ ++g++++  +  + ++d+y + ePw++ +++k+        +k++yfF+++++ ++t++r +r
  Rmu_sc0002449.1_g000011.1  16 LPGERFCPMEDELVLFYLKPMLSGETVPGRNRvVFDCDLYGHqEPWEIWEAYKTrrpndlrLNKDIYFFTQHKTMSSTDTRIRR 99 
                                589***********************8875544999****8879****743333234333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++ +g+Wk   + k+v+s  +g++vglkk L++ + +a++ ++  W++ e+ l
  Rmu_sc0002449.1_g000011.1 100 TVGNGTWKGDDSGKPVKSLeTGRVVGLKKRLTYKN-QASE-HNGCWILYEFYL 150
                                ********9999999988668999********984.3333.6999*****976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MQQQFAVEES RGNLQLPGER FCPMEDELVL FYLKPMLSGE TVPGRNRVVF DCDLYGHQEP  60
WEIWEAYKTR RPNDLRLNKD IYFFTQHKTM SSTDTRIRRT VGNGTWKGDD SGKPVKSLET  120
GRVVGLKKRL TYKNQASEHN GCWILYEFYL DPSLRDKKQK VEDYVLCLLR KNGEPRAKIT  180
KRRKQREEED VLENNYACDD GENTNKEQPQ AKRQRMGEQN GGLQHFVSEV QSGDDHGMLI  240
PLPEEDFLWE EMLQQMGMGD DHGIPEEDFL WEDILQQIGS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-15NAC family protein