PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002453.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 148aa    MW: 15966.1 Da    PI: 10.2783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002453.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111255245
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               +i n+  r v f++Rr+g++KKA+ L  + ++ +a+ ++s+tg+
  Rmu_sc0002453.1_g000004.1 12 PITNYQSRMVAFTRRRTGLFKKAQKLEEMSGTSIAIAVISETGQ 55
                               799***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MGTGKKKIDI EPITNYQSRM VAFTRRRTGL FKKAQKLEEM SGTSIAIAVI SETGQPYLHG  60
STSLLERVLT SKASSSTVTG SSTTTADAGS STTTATTGSL ERFKARVNSQ IEACATLEDA  120
ESLKRKLLEI KRRADDKVSG SDLQFVLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-12M-type_MADS family protein