PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002487.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 238aa    MW: 27118.7 Da    PI: 5.7184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002487.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-094089154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               r++ +  rE+ RRdr+N+ f  L   l ++     +K++Ka+iL+ +++ +k+L
  Rmu_sc0002487.1_g000008.1 40 RKVQKADREKLRRDRLNEHFLDLGNTLDPD----RPKNDKATILTDTIQMLKDL 89
                               5677889********************997....79****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDQWKGDDFA GVSAPSSSQP LACDSRKRAD LETKDPVSAR KVQKADREKL RRDRLNEHFL  60
DLGNTLDPDR PKNDKATILT DTIQMLKDLT SDVNKLKAEC AALNDESHEL TVEKNELREE  120
KASLKSDIEN LNAQYQQRVR VMFPWGAMDP SVVMAPPYSY PMPVAVPPGP IPMVRVRDRV  180
DDLILHRSNS SKGEAKVDEN KDFVCRFCYS NQNWGICEEM ILTNIHHKND YNLSIFSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-59bHLH family protein