PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002506.1_g000040.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 282aa    MW: 32079.7 Da    PI: 6.4349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002506.1_g000040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-12242848
                               HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
  Rmu_sc0002506.1_g000040.1  2 EDRILREYITTHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 42
                               9**************************************97 PP
2Myb_DNA-binding51.72e-164891146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  Rmu_sc0002506.1_g000040.1 48 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 91
                               7899******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEDRILREYI TTHGEGKWRN LPKRAGLKRC GKSCRLRWLN YLRPDIKRGN ITRDEEELII  60
RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TNIGKKVQDH SSTNSEANIT HRKPPNHQTQ  120
QKNTNVVRTK ASRCTKVFIP HLSQMDEENN PTVQQVAAPF LNHDYYDQVN NNDDPPLGMM  180
GTGTDHQPAD DLPPFLNLEI DDENSNSCGF MVDFKMDESF LSEFLNVDFS QLYSSTSTAN  240
GGDGVKAAIS TSCGDDNHHK LHGPDFQSSM APILDSELDW LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-59MYB family protein