PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002531.1_g000035.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 130aa    MW: 14600.5 Da    PI: 4.7105
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002531.1_g000035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.58.4e-4251041100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaC++lrr+C++dC++apyfp ++p++fa+vh++FGasnv ++l++lp++ r +a+++l+yeAe+r++dPvyG+vgvi++l+
  Rmu_sc0002531.1_g000035.1   5 RCAACRYLRRRCPSDCIFAPYFPPNNPQRFAAVHRIFGASNVGRMLQQLPPDLRAQAADTLYYEAECRVEDPVYGCVGVISQLH 88 
                                6*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +q+++++ ela++++ 
  Rmu_sc0002531.1_g000035.1  89 EQIDEAECELAKTRAD 104
                                ***********99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MISGRCAACR YLRRRCPSDC IFAPYFPPNN PQRFAAVHRI FGASNVGRML QQLPPDLRAQ  60
AADTLYYEAE CRVEDPVYGC VGVISQLHEQ IDEAECELAK TRADIVINCD IGQQAQVQQI  120
HDEVEDNSSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.12e-41LBD family protein