PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002532.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 227aa    MW: 24628.4 Da    PI: 4.3189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002532.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026200223123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ++C  C++sF++   L++H +  H
  Rmu_sc0002532.1_g000010.1 200 FRCDPCNRSFNSDGALQSHTKAkH 223
                                89999**************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MANKMKFWGV EVKSGESIVV EPGITLVHLS QACLDEVKKG KGSDSISLFV KTAEPKVSLE  60
EAKKEIKSDK KDSSSDDDDD DESEDEEFDQ VKSVEDGSED DEESSDDDDD DDDSEDEDDD  120
SEDENEETPN KVDGSNKRAA ESSKTPVQKK AKFVTPEKTS GKKGAVHTAT PYPSKQALKR  180
PANTDQTKLQ SSKSSGGGTF RCDPCNRSFN SDGALQSHTK AKHGAAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-19C2H2 family protein