PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002536.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 115aa    MW: 13511.4 Da    PI: 5.2498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002536.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.68.7e-187110194
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkr 73 
                                l pG rF P ++el++ yLk+kv++ +++  e+ i e+d+y   +Pw++ +     +  a    ++k++yfF++++kk+at++r
  Rmu_sc0002536.1_g000004.1   7 LLPGQRFCPMEDELLMSYLKPKVNEMQVPDnEDLICEMDLYGDqDPWKIWErfearR--AndlrRNKDLYFFTQKRKKTATSTR 88 
                                579***********************96651456******97549****74344442..1345466799*************** PP

                        NAM  74 knr.atksgyWkatgkdkevls 94 
                                +++   + g+Wk     ke++ 
  Rmu_sc0002536.1_g000004.1  89 TSQtFGSGGTWKGLNAAKEMYL 110
                                ***4455889**9998888775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MEGGCMLLPG QRFCPMEDEL LMSYLKPKVN EMQVPDNEDL ICEMDLYGDQ DPWKIWERFE  60
ARRANDLRRN KDLYFFTQKR KKTATSTRTS QTFGSGGTWK GLNAAKEMYL LDQNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-06NAC family protein