PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002539.1_g000095.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 479aa    MW: 54174.4 Da    PI: 6.3675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002539.1_g000095.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.56.5e-139584741374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL  cA++v+sg+ e+a+  L+++s+las  gd+mqR+aayfteALa r+++  ++lykal++++ s  + +ee+++ +lf
  Rmu_sc0002539.1_g000095.1  58 LIQLLQCCAHHVASGSIEQANVWLEQISQLASAGGDTMQRIAAYFTEALADRMLKGLPGLYKALNSTKLS--SIAEEIHIKRLF 139
                                5799999*********************************************************999998..59********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                ++++P+lk+s++++NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke le+++ rL++ 
  Rmu_sc0002539.1_g000095.1 140 FDLCPFLKLSYVITNQAIVEAMEGEKMVHIIDLHSFEPAQWINLIQTLNARPEGPPHLRITGIHE----HKEVLEQMAARLTEE 219
                                *****************************************************************....9************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................................... 214
                                Ae+ ++pf+fn+ ++++le+l++e+Lrvk+gEalaV++vlqlh+ll                                      
  Rmu_sc0002539.1_g000095.1 220 AEKHDIPFQFNA-IVSKLENLDVESLRVKTGEALAVCSVLQLHSLLatdddmtrrksplatnnlqkvmhinkltlgewlekdpi 302
                                ************.7999******************************************************************* PP

                       GRAS 215 ................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                  s     +  ++L ++++lsPk++v++eqe++hn++++++r++eal+yy+alfd+le++++r+s er
  Rmu_sc0002539.1_g000095.1 303 sayslspdsslsplslGASP----KMGSFLTALWGLSPKLMVITEQESNHNGHTLMDRIIEALHYYAALFDCLESTVSRASMER 382
                                *******9886653333333....5677******************************************************** PP

                       GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                                +kvE++l+g+ei+n+++ceg++r+erhe+lekW  rle +GF+ v+ls++  +qak +lr ++ dgy+++e++g+lv++W+drp
  Rmu_sc0002539.1_g000095.1 383 QKVEKMLFGEEIKNIISCEGTDRKERHEKLEKWILRLELSGFGRVQLSYHGRMQAKKMLRDYGYDGYEIKEDNGCLVICWHDRP 466
                                ************************************************************************************ PP

                       GRAS 367 LvsvSaWr 374
                                L+svSaWr
  Rmu_sc0002539.1_g000095.1 467 LFSVSAWR 474
                                *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MSVLVVDQKM AQEDGSPVTS SAMYFPGLGS PYPWLSPGIG SPYPWLRELK SEERGLCLIQ  60
LLQCCAHHVA SGSIEQANVW LEQISQLASA GGDTMQRIAA YFTEALADRM LKGLPGLYKA  120
LNSTKLSSIA EEIHIKRLFF DLCPFLKLSY VITNQAIVEA MEGEKMVHII DLHSFEPAQW  180
INLIQTLNAR PEGPPHLRIT GIHEHKEVLE QMAARLTEEA EKHDIPFQFN AIVSKLENLD  240
VESLRVKTGE ALAVCSVLQL HSLLATDDDM TRRKSPLATN NLQKVMHINK LTLGEWLEKD  300
PISAYSLSPD SSLSPLSLGA SPKMGSFLTA LWGLSPKLMV ITEQESNHNG HTLMDRIIEA  360
LHYYAALFDC LESTVSRASM ERQKVEKMLF GEEIKNIISC EGTDRKERHE KLEKWILRLE  420
LSGFGRVQLS YHGRMQAKKM LRDYGYDGYE IKEDNGCLVI CWHDRPLFSV SAWRFRRYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein