PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002547.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SRS
Protein Properties Length: 376aa    MW: 39587.4 Da    PI: 7.2092
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002547.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.92.2e-671312964154
                     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkre 77 
                                 t+sCqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa+krrerqqq+ +a +++++++            +++kr re
  Rmu_sc0002547.1_g000016.1 131 STVSCQDCGNQAKKDCVHMRCRTCCKSRGFDCATHVKSTWVPASKRRERQQQQLTALQQQQQQHtqqevqvirgGGENPKRLRE 214
                                5789*********************************************87766655555544447889998884444444444 PP

                     DUF702  78 l......kskkqsa.lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                +      + +++s+  ++t++ +  +++ le+ ++P+ev s+avfrcvrvss+dd+e+++aYqtav+i+GhvfkGiLy+qG+++
  Rmu_sc0002547.1_g000016.1 215 SsnnnpnNPSSNSSlGACTRIIT--NTSGLEVGNFPAEVTSPAVFRCVRVSSIDDDEDQYAYQTAVNIAGHVFKGILYNQGPDT 296
                                42222212222222023333333..344577777************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MAGFLSLGGG GGGGGGGRSS HNPESRNQNQ PESSEIPPET LFWYKNEEGM PFKGSFELWQ  60
HQQQQLQHHQ QQQHQLQQLQ LQQDLYASAA ALGVGPSSIN VSDESSSRPF MMMRPSSSGG  120
GGGGGGSTSG STVSCQDCGN QAKKDCVHMR CRTCCKSRGF DCATHVKSTW VPASKRRERQ  180
QQQLTALQQQ QQQHTQQEVQ VIRGGGENPK RLRESSNNNP NNPSSNSSLG ACTRIITNTS  240
GLEVGNFPAE VTSPAVFRCV RVSSIDDDED QYAYQTAVNI AGHVFKGILY NQGPDTNYNM  300
STAGESSSGG GGGGGGGGGG VIQPLNLINA APTTVGSGGV TVAAASGSGT LMDPNSLYPV  360
NPFMASGTQF FLPPRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.17e-69SRS family protein