PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002557.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 251aa    MW: 27436.9 Da    PI: 4.3809
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002557.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.1e-153898256
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                                +R+t+t++ql++L+el++    +y + e+++e+  +l    ++++++V++WFqN +a+e+
  Rmu_sc0002557.1_g000022.1 38 NNRWTPTPDQLRILQELYYDkvLKYQTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARER 98
                               58****************96679************************************98 PP
2Wus_type_Homeobox87.21.7e-2837100264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp+Q++iL+ely+ + l+  + e+iq+i  +L++yG+iedkNVf+WFQN kaRer k
  Rmu_sc0002557.1_g000022.1  37 PNNRWTPTPDQLRILQELYYdKVLKYQTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERLK 100
                                679***************99567778889*********************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MEPRTLQLME LQTQQQIEDG GNNQASGSSA NTPIRQPNNR WTPTPDQLRI LQELYYDKVL  60
KYQTPEQIQE ICLHLQQYGQ IEDKNVFFWF QNLKARERLK LREIRNVRVG GSLDLNFGST  120
GSTDDGRSID LNFGSTGSTG TDRSIDLNFG SHVGYGVDPY SSSPFNTNTS TTSYGTAGGQ  180
TSMDQRGGDH QEIETLPLFP VQGEDVLGNL KTTSEEGSAY GYYSGGSGGY NSGSPVSLEL  240
SLNPSGAADL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-22WOX family protein