PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002636.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 188aa    MW: 20960.7 Da    PI: 6.9131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002636.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-1163981549
                               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEE CS
                     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk.lyey 49
                                R++ ++KKAeELS LC+++v++i++  + + + ++
  Rmu_sc0002636.1_g000029.1 63 DRKKNLIKKAEELSKLCGVDVCLILYQRHSTiVETW 98
                               6***********************998766514455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MYSNWSAISM WHFIRADLHR NELAAMLQGQ QACDDAAGAV GGTRVLKDCM SSSRKSDRKK  60
VRDRKKNLIK KAEELSKLCG VDVCLILYQR HSTIVETWPQ DPAEVKRIIT GYKANPGIRD  120
ASIPSSETKG LEETKAGKSH SGRETVVNSD EEREMLYPTW DDGLGYCSED ELIRLVASLD  180
AKLEASAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-14M-type_MADS family protein